Protocols & Guidelines

ORGAN CIRCULATORY SUPPORT LOLLY REGIMEN Description Short Description The Organ Circulatory Support Lolly Regimen is a gentle, daily natural support system using five specialized herbal lollies to…

Abstract: Diphtheria is a vaccine-preventable disease, yet immunization can wane over time to non-protective levels. We have developed a low-cost, miniaturized electroanalytical biosensor to…

Real time non-invasive Brain Computer Interfaces have a significant progressive role in restoring or maintaining a quality life for medically challenged people. This manuscript provides a…

Open, MIT-licensed food & nutrition science research skills for Claude Code, Codex, and MiniMax Agent — multi-agent literature/systematic review, journal-aware writing, peer review, and figures,…

—Myoelectric prostheses have seen increased application in clinical practice and research, due to their potential for good functionality and versatility. Yet, myoelectric prostheses still suffer…

protocols and compute service for using alchemiscale with Folding@Home

BioMed MCP over AlphaFold DB + 8 public sources, with SQLite knowledge graph, offline mode, and explicit clinical-use limits.

239 evaluated academic Claude/agent skills across 17 research domains (bioinformatics, data science, clinical, social-science methods, Turkish academia & more). Executable eval per skill,…

Modeling and Bayesian analysis of fluorescence and absorbance assays.

Stream live EEG brain state (focus, calm, attention) from any EEG device into Claude and any MCP client — a real Model Context Protocol server + brain-computer interface toolkit.

Original Research Paper BILATERAL INGUINAL HERNIA CLINICAL PROFILE AND MANAGEMENT IN RURAL TERTIARY CARE CENTRE- AN PROSPECTIVE INTERVENTIONAL STUDY 1 Dr Rajiv Sonarkar, 2 Dr Avinash Babruwan…

The #1 open-source collection of scientific AI Agent Skills, tool specifications, and prompt protocols for Bioinformatics, Genomics, Drug Discovery, and Multi-Omics. Compatible with Cursor, Claude…

A Python library to assist with scripting bio-automation protocols

BioMCP: Biomedical Model Context Protocol

Connecting AI to biomedical data

Demonstrating best practices for bioinformatics command line tools

Forensic biopharma catalyst auditor — 10-tool MCP server that cross-references CT.gov, SEC EDGAR, openFDA, PubMed & Yahoo Finance to return a single deterministic verdict (CLEAN / BEAR_SIGNAL /…

VWorks protocols and other files for the Agilent NGS Workstations at the Genomics facility at SciLifeLab.

Background. Application of evidence from landmark cardiology trials to individual patients requires comparing each patient against each trial's published inclusion and exclusion criteria, an…

Full CBCT + 2D radiograph viewer from a board-certified oral and maxillofacial radiologist: 8 reading modes, local-first, open source. Also the first viewer AI agents can drive natively (MCP).

Search and query CDC public health data — mortality, vaccinations, surveillance, behavioral risk (Socrata SODA API) via MCP. STDIO or Streamable HTTP.

MCP server for spatial transcriptomics analysis through natural language interfaces.

MCP server for Claude: molecule names or SMILES → publication-style 2D structure drawings (PNG/SVG, offline via RDKit), reaction schemes, curved-arrow mechanisms and schematic spectra. Optional…

Chia Health MCP Server — Patient workflow integration for a licensed US telehealth platform. Browse GLP-1 medications (semaglutide, tirzepatide), peptide therapies (sermorelin, NAD+, glutathione),…

Clinical Trial Risk Tool for analysing clinical trial protocols using natural language processing and assessing the risk of ending uninformatively, developed by Fast Data Science

[Frontiers in Comp. Neuro.] Deep Attention Super-Resolution of Brain Magnetic Resonance Images Acquired Under Clinical Protocols

Search ClinicalTrials.gov trials, retrieve study details and results, and match patients to eligible trials via MCP. STDIO or Streamable HTTP.

This is my personal coding guidelines optimized for radiotherapy research and inspired by Andrej Karpathy's work on Claude skills. Hope you like it!

An advanced multi-agent system for clinical decision support, enabling deep phenotypic prediction by integrating hierarchical multi-modal deviation maps and non-tabular electronic health records.

Vue 3 UI library for healthcare and not only. We are full configurable mobile first UI library. Our components are accessibility-friendly and follow best practices in terms of design and coding. We…

Templates and functions for opentrons robots. Functional protocols for RT-qPCR covid19 tests.

Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials

Phoenix CTMS - the ultimative CTMS/PRS/CDMS.

Official repository for the Deep Docking protocol

Scripts used in "Deep learning for decision support in dermatology". This work was presented as a M. Sc. Thesis for the Technical University of Denmark (DTU).

Public registry for local-first wellness MCP connectors: wearables, recovery, training, nutrition and the Delx Wellness Hermes profile.

This paper presents a novel approach to developing a laboratory testbed for cybersecurity testing distribution substations, focusing on the GOOSE communication protocol specified by IEC 61850. The…

Automation can improve the efficiency, reproducibility, and affordability of clinical immunodiagnostics, yet most ELISA automation platforms are bulky and expensive and remain poorly suited to…

In our research group, we currently work on the software, firmware, and hardware development related to digital microfluidic biochips. Digital microfluidic biochips allow the execution of biological…

Exploratory DICOM Protocol Buffer Representations and Generator

Python script to send folder of DICOM files to a PACS through the DICOM protocol

DICOMweb Model Context Protocol (MCP) server implementation

Pharmaceutical R&D Pipeline Intelligence MCP Server — Clinical trials, FDA/EMA approvals, safety data. Questions? Start here!

Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist

Engineering experimental toolkit for single-channel EEG/ECG acquisition, real-time visualization, analysis and report generation based on TGAM/ThinkGear-like protocol. For learning/research only,…

The emergence of new and adaptive microbial strains has intensified the need for advanced pathogen detection methods. Over the past three decades, 33 novel pathogens, including severe acute…

Explainable machine learning models for Type-2 diabetes risk prediction with focus on interpretability and clinical decision support.

Predict taste & aroma from a molecule's chemical structure — on-prem flavor prediction for food, beverage & fragrance R&D. 🧪

The WFO RAG agent and LLM integration introduces a Large Language Model (LLM)-based search implementation in the Workflow Orchestrator (WFO). This incubator successfully evaluates and integrates a…

GSoC 2017 Project with Shogun - Patient Monitoring and Decision Support using Health Data

This repository contains the software part of the design files for the article "Open-source implementation of polarisation-resolved single-shot differential phase contrast microscopy ( pDPC ) on a…

Bridging the gap between theory and bedside practice through open-access, physiologically-weighted, evidence based, decision support tools for anesthesia and intensive care.

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

MCP server for Kaloricke Tabulky food search, custom recipes, and diary writes

Özet Dermatofit enfeksiyonlarında etkenin doğru ve hızlı tanımlanması hasta yönetimi ve uygun tedavilerin planlanması için anahtar roller üstlenir. Direkt inceleme, Wood lambası, mikroskopi, kültür,…

AI Agent wrappers for Life Sciences APIs (Open Targets, ChEMBL, UniProt). Accelerating drug discovery with Model Context Protocol (MCP) and FastMCP.

🏥 MCP Server with 121 validated medical calculators for AI agents. DDD architecture, evidence-based formulas with PMID citations. Supports Claude, GPT, and other LLM integrations.

Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

Agent Skills for medical research — literature search, reporting-guideline & citation checks, statistics, publication figures, submission. Works with Claude Code, Codex, Cursor & GitHub Copilot.…

Microscopy Metadata Checklist Generator in Shiny