allhic

imported

software/allhic

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

Machine-generated from the listed sources and not yet reviewed by a human.

allhic project image — GitHub preview card for tanghaibao/allhic. Served by its origin, not stored here, and not covered by this registry’s licence.

record

Category: Software & Systems
Subcategory: unknown
License: BSD-3-Clause(osi)
Status: dormant
Maturity: deployed
Organization: unknown
Country: unknown
Homepage: unknown
Repository: github.com/tanghaibao/allhic
Documentation: unknown
Tags: contigs · genetic-algorithm · genome-assembly · genome-scaffolding · genomics · golang · heterozygous · hi-c · inter-contig-links · lachesis · pipeline · polyploid
Regulatory: unknown

built by · 2

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

RaGOOgenome-assembly · genome-scaffolding
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
mccortexcontigs · genome-assembly · genomics
De novo genome assembly and multisample variant calling
instaGRAALgenome-assembly · genomics · hi-c
Large genome reassembly based on Hi-C data, continuation of GRAAL
genomeassemblygenome-assembly · genomics · pipeline
A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project
treevalgenome-assembly · genomics · pipeline
Pipelines for the production of Treeval data
wallycontigs · genomics
Wally: Visualization of aligned sequencing reads and contigs

sources

api.github.com/repos/tanghaibao/allhic
retrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2025-01-03, 60 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/28.json→ .entries["allhic"]

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