Bio-Tradis
importedsoftware/bio-tradis
A set of tools to analyse the output from TraDIS analyses
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- active
- Maturity
- deployed
- Organization
- sanger-pathogens
- Country
- unknown
- Repository
- github.com/sanger-pathogens/Bio-Tradis
- Documentation
- unknown
- Tags
- bioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · research · sequencing
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- aribabioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · sequencing
Antimicrobial Resistance Identification By Assembly
- Artemisbioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · sequencing
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
- circlatorbioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · sequencing
A tool to circularize genome assemblies
- gff3toemblbioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · sequencing
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
- ivabioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · sequencing
de novo virus assembler of Illumina paired reads
- mlst_checkbioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · sequencing
Multilocus sequence typing by blast using the schemes from PubMLST
- api.github.com/repos/sanger-pathogens/Bio-Tradisretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-06-15, 25 stars, license reported as NOASSERTION. Category and schematic were assigned by keyword heuristics and are unreviewed. GitHub reported NOASSERTION; the licence was read from the LICENSE file as GPL-3.0, because GitHub's detector does not recognise open hardware licences.
Not yet verified by a human. Correct this record →
/v1/entries/23.json→ .entries["bio-tradis"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.