bioengine

Category

Software & Systems

Subcategory

unknown

License

MIT(osi)

Status

active

Maturity

deployed

Organization

aicell-lab

Country

unknown

Homepage

bioimage.io/#/bioengine

Repository

github.com/aicell-lab/bioengine

Documentation

unknown

Tags

ai-agents · bioimage-analysis · bioinformatics · cellpose · deep-learning · gpu-computing · hypha · image-segmentation · microscopy · model-zoo · python · ray-serve

Regulatory

unknown

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• cellseg_models.pytorchcellpose · microscopy

  Encoder-Decoder Cell and Nuclei segmentation models

• openhcsbioimage-analysis · gpu-computing · microscopy

  Typed, reproducible high-content microscopy workflows across GUI, Python, CellProfiler, Napari/Fiji, GPU, and local MCP agents.

• pansegbioimage-analysis · bioinformatics · image-segmentation

  A tool for cell instance aware segmentation in densely packed 3D volumetric images

• pyvsnrgpu-computing · microscopy

  A Python library for computing the VSNR in 2D images. It provides both CPU and GPU implementations.

• brain_tissue_nuc_segmbioimage-analysis · microscopy

  Segmentation of nuclear signals in fluorescently stained mouse brain tissue sections. Segmentations performed with a fine-tuned Stardist 3D model and/or Cellpose

• Enhancing-Reproducibilitybioimage-analysis · microscopy

  Companion notebooks for our paper on reproducible statistics in bioimage analysis — runs in-browser via Binder

1. api.github.com/repos/aicell-lab/bioengine
   retrieved 2026-08-25 · via github-api

   Machine-imported from GitHub search. Last push 2026-08-25, 7 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

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