cgDist
importedsoftware/cgdist
Ultra-fast SNP/indel-level distance calculator for core genome MLST analysis in bacterial genomics
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- genpat-it
- Country
- unknown
- Homepage
- github.com/genpat-it/cgDist
- Repository
- github.com/genpat-it/cgDist
- Documentation
- unknown
- Tags
- bacterial-genomics · bioinformatics · cgmlst · epidemiology · food-safety · genomics · mlst · outbreak-investigation · phylogenetics · recombination-flagging · rust · snp-analysis
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- chewBBACAbioinformatics · cgmlst · genomics · mlst
BSR-Based Allele Calling Algorithm
- bigbacterbacterial-genomics · snp-analysis
Bacterial surveillance pipeline.
- bac-genomics-scriptsbioinformatics · genomics · mlst
Collection of scripts for bacterial genomics
- corgecgmlst · epidemiology
Nextflow pipeline for bacterial clustering and linkage detection based on core genome analysis, designed to support genomic surveillance and outbreak investigations
- PhyloTracecgmlst · epidemiology
PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.
- ANIclustermapbioinformatics · genomics · phylogenetics
A tool for drawing ANI clustermap between all-vs-all microbial genomes
- api.github.com/repos/genpat-it/cgDistretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-05-27, 6 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/47.json→ .entries["cgdist"]
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