cooler
importedsoftware/cooler
A cool place to store your Hi-C
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- BSD-3-Clause(osi)
- Status
- active
- Maturity
- deployed
- Organization
- open2c
- Country
- unknown
- Homepage
- open2c.github.io/cooler
- Repository
- github.com/open2c/cooler
- Documentation
- unknown
- Tags
- 3d-genome · bioinformatics · chromatin · contact-matrix · cooler · file-format · genomics · hdf5
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- HiCPeaksbioinformatics · chromatin · contact-matrix · cooler · genomics
A Python implementation for BH-FDR and HiCCUPS
- TADLibbioinformatics · chromatin · contact-matrix · cooler · genomics
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
- coolpuppybioinformatics · contact-matrix · genomics
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
- CUT-RUNTools-2.0bioinformatics · chromatin · genomics
CUT&RUN and CUT&Tag data processing and analysis
- hictkbioinformatics · cooler · genomics
Blazing fast toolkit to work with .hic and .cool files
- juicer3d-genome · bioinformatics · genomics
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- api.github.com/repos/open2c/coolerretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-03, 242 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/11.json→ .entries["cooler"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.