craftgrn
importedsoftware/craftgrn
Combined RNA and ATAC Footprint Training of Gene Regulatory Network
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- active
- Maturity
- deployed
- Organization
- oncologylab
- Country
- unknown
- Homepage
- oncologylab.github.io/craftgrn/
- Repository
- github.com/oncologylab/craftgrn
- Documentation
- unknown
- Tags
- atac-seq · bioinformatics · chromatin-accessibility · computational-biology · gene-regulation · gene-regulation-networks · multiomics · network-inference · regulatory-genomics · rna-seq · topic-modeling · transcription-factors
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- fp-toolsatac-seq · bioinformatics · regulatory-genomics
Command-first ATAC-seq footprinting, motif analysis, and reproducible interactive reports
- ReCoNatac-seq · multiomics · rna-seq
Exploring multicellular coordination from single-cell gene expression / multi-omics using mutlilayer network representations
- Topyficbioinformatics · topic-modeling
Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data
- BITFAMrna-seq · transcription-factors
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021)…
- ChromDragoNNgene-regulation
Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
- seq2scienceatac-seq · bioinformatics · rna-seq
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
- api.github.com/repos/oncologylab/craftgrnretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-08-13, 275 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/10.json→ .entries["craftgrn"]
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