entrain

Category

Software & Systems

Subcategory

unknown

License

GPL-3.0(osi)

Status

dormant

Maturity

deployed

Organization

unknown

Country

unknown

Homepage

theimagelab.github.io/entrain/

Repository

github.com/theimagelab/entrain

Documentation

unknown

Tags

cell-cell-communication · cell-fate · differentiation · microenvironment · rna-velocity · single-cell · trajectory-analysis

Regulatory

unknown

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• neuroblastomamicroenvironment · single-cell

  Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

• scLANErna-velocity · single-cell

  Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

• scvelo-rsrna-velocity · single-cell

  Drop-in Rust + PyO3 acceleration of scvelo for single-cell RNA velocity

• SCEVANmicroenvironment

  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of…

• CellTalkDBcell-cell-communication · single-cell

  A manually curated database of literature-supported ligand-receptor interactions in human and mouse

• CrossTalkeRcell-cell-communication · single-cell

  R package to do the Ligand Receptor Analysis Visualization

1. api.github.com/repos/theimagelab/entrain
   retrieved 2026-08-25 · via github-api

   Machine-imported from GitHub search. Last push 2023-11-13, 8 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

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