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jvarkit

imported

software/jvarkit

Java utilities for Bioinformatics

Machine-generated from the listed sources and not yet reviewed by a human.

jvarkit project image
GitHub preview card for lindenb/jvarkit. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
active
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
jvarkit.readthedocs.io/
Repository
github.com/lindenb/jvarkit
Documentation
unknown
Tags
bioinformatics · biology · genomics · java · next-generation-sequencing · ngs · science
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • ngsbioinformatics · genomics · next-generation-sequencing · ngs

    Command line utility for working with next-generation sequencing files.

  • fetch_ngsgenomics · next-generation-sequencing · ngs

    Workflow to Fetch Public Sequencing Data and Metadata Using iSeq and MrBiomics Module.

  • adVNTRbioinformatics · genomics · next-generation-sequencing

    A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

  • albatradisbioinformatics · genomics · next-generation-sequencing

    Comparative TraDIS analysis

  • aribabioinformatics · genomics · next-generation-sequencing

    Antimicrobial Resistance Identification By Assembly

  • Artemisbioinformatics · genomics · next-generation-sequencing

    Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

sources
  1. api.github.com/repos/lindenb/jvarkit
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-07-24, 524 stars, license reported as NOASSERTION. Category and schematic were assigned by keyword heuristics and are unreviewed. GitHub reported NOASSERTION; the licence was read from the LICENSE file as MIT, because GitHub's detector does not recognise open hardware licences.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/42.json→ .entries["jvarkit"]

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