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pdb-tools

imported

software/pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

Machine-generated from the listed sources and not yet reviewed by a human.

pdb-tools project image
GitHub preview card for haddocking/pdb-tools. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
Apache-2.0(osi)
Status
active
Maturity
deployed
Organization
haddocking
Country
unknown
Homepage
haddocking.github.io/pdb-tools/
Repository
github.com/haddocking/pdb-tools
Documentation
unknown
Tags
bioinformatics · pdb · protein · python · rcsb · structural-bioinformatics · structural-biology · utrecht-university
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • protein-mcp-serverbioinformatics · pdb · protein · rcsb · structural-biology

    Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.

  • ProteinViewbioinformatics · pdb · protein · structural-biology

    Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Sixel/Kitty graphics

  • hbatbioinformatics · pdb · structural-bioinformatics · structural-biology

    HBAT 2: A Python Package to analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures https://hbat-web.abhishek-tiwari.com

  • arpeggiobioinformatics · pdb · structural-biology

    Calculation of interatomic interactions in molecular structures

  • freesasabioinformatics · pdb · structural-biology

    C-library for calculating Solvent Accessible Surface Areas

  • alphafold3-complex-dockingbioinformatics · pdb · structural-biology

    Analysis toolkit for AlphaFold3 biomolecular complex predictions (Protein-DNA, Protein-RNA, Protein-Ligand). Parses PAE error matrices, SASA, and interface binding energies.

sources
  1. api.github.com/repos/haddocking/pdb-tools
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-06-10, 457 stars, license reported as NOASSERTION. Category and schematic were assigned by keyword heuristics and are unreviewed. GitHub reported NOASSERTION; the licence was read from the LICENSE file as Apache-2.0, because GitHub's detector does not recognise open hardware licences.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/63.json→ .entries["pdb-tools"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.