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PPanGGOLiN

imported

software/ppanggolin

Build a partitioned pangenome graph from microbial genomes

Machine-generated from the listed sources and not yet reviewed by a human.

PPanGGOLiN project image
GitHub preview card for labgem/PPanGGOLiN. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
AGPL-3.0, GPL-2.0(mixed)
Status
active
Maturity
deployed
Organization
labgem
Country
unknown
Homepage
ppanggolin.readthedocs.io
Repository
github.com/labgem/PPanGGOLiN
Documentation
unknown
Tags
bacteria · bioinformatics · comparative-genomics · microbial-genomics · microbiology · pangenome
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • pangraphbacteria · bioinformatics · pangenome

    A bioinformatic toolkit to align genome assemblies into pangenome graphs

  • poodlebacteria · bioinformatics · pangenome

    Nextflow pipeline that integrates reference-based SNP calling, recombination filtering, and pangenome analysis to detect genetically linked isolates, designed for bacterial genomic surveillance and…

  • bac-genomics-scriptsbioinformatics · microbial-genomics · microbiology

    Collection of scripts for bacterial genomics

  • BRIGbioinformatics · comparative-genomics · microbiology

    BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.

  • platonbacteria · bioinformatics · microbiology

    Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

  • ANIclustermapbioinformatics · comparative-genomics · microbial-genomics

    A tool for drawing ANI clustermap between all-vs-all microbial genomes

sources
  1. api.github.com/repos/labgem/PPanGGOLiN
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-08-25, 310 stars, license reported as NOASSERTION. Category and schematic were assigned by keyword heuristics and are unreviewed. GitHub reported NOASSERTION; the licence was read from the LICENSE file as AGPL-3.0, GPL-2.0, because GitHub's detector does not recognise open hardware licences.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/60.json→ .entries["ppanggolin"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.