pycytominer

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software/pycytominer

Python package for image-based profiling

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pycytominer project image — GitHub preview card for cytomining/pycytominer. Served by its origin, not stored here, and not covered by this registry’s licence.

record

Category: Software & Systems
Subcategory: unknown
License: BSD-3-Clause(osi)
Status: active
Maturity: deployed
Organization: cytomining
Country: unknown
Homepage: pycytominer.readthedocs.io/en/latest/
Repository: github.com/cytomining/pycytominer
Documentation: unknown
Tags: cellprofiler · cytominer · image-analysis · image-based-profiling · microscopy · morphological-profiling · python
Regulatory: unknown

built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

Morpheliaimage-based-profiling · microscopy · morphological-profiling
Exploratory data analysis for image-based morphological profiling
Enhancing-Reproducibilitycellprofiler · image-analysis · microscopy
Companion notebooks for our paper on reproducible statistics in bioimage analysis — runs in-browser via Binder
CytoDataFrameimage-analysis · image-based-profiling
An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.
openhcscellprofiler · microscopy
Typed, reproducible high-content microscopy workflows across GUI, Python, CellProfiler, Napari/Fiji, GPU, and local MCP agents.
scmorphmorphological-profiling
Single-cell morphological analysis
amfinderimage-analysis · microscopy
The Automatic Mycorrhiza Finder (AMFinder) allows for automatic computer vision-based identification and quantification of AM fungal colonisation and intraradical hyphal structures on ink-stained…

sources

api.github.com/repos/cytomining/pycytominer
retrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-05, 144 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.

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/v1/entries/6.json→ .entries["pycytominer"]

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