pySCENIC
importedsoftware/pyscenic
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- aertslab
- Country
- unknown
- Homepage
- scenic.aertslab.org
- Repository
- github.com/aertslab/pySCENIC
- Documentation
- unknown
- Tags
- gene-regulatory-network · single-cell · transcription-factors · transcriptomics
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- SCORPIONgene-regulatory-network · single-cell · transcription-factors · transcriptomics
Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks
- BITFAMsingle-cell · transcription-factors
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021)…
- GRnnDatagene-regulatory-network · single-cell
Awesome GRN enhanced AnnData toolkit
- normalisrgene-regulatory-network · single-cell
Causal inference, differential expression, and co-expression for scRNA-seq
- RegDiffusiongene-regulatory-network · single-cell
Diffusion model for gene regulatory network inference.
- rustscenicgene-regulatory-network · single-cell
Faster, lower-memory Rust rewrite of the SCENIC and SCENIC+ analysis stack: GRN, AUCell, cisTarget, topics, peak-to-gene links, and eRegulons.
- api.github.com/repos/aertslab/pySCENICretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2025-06-26, 630 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/39.json→ .entries["pyscenic"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.