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sarek

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software/sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Machine-generated from the listed sources and not yet reviewed by a human.

sarek project image
GitHub preview card for nf-core/sarek. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
active
Maturity
deployed
Organization
nf-core
Country
unknown
Homepage
nf-co.re/sarek
Repository
github.com/nf-core/sarek
Documentation
unknown
Tags
annotation · bioinformatics · cancer · conda · containers · gatk4 · genomics · germline
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

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    Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

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    kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

  • V-pipebioinformatics · conda · genomics

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

  • nRexgermline

    nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

  • bac-genomics-scriptsannotation · bioinformatics · genomics

    Collection of scripts for bacterial genomics

  • DRAMannotation · bioinformatics · genomics

    Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

sources
  1. api.github.com/repos/nf-core/sarek
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-08-04, 590 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/53.json→ .entries["sarek"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.