scdownstream
importedsoftware/scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- nf-core
- Country
- unknown
- Homepage
- nf-co.re/scdownstream
- Repository
- github.com/nf-core/scdownstream
- Documentation
- unknown
- Tags
- clustering · dimensionality-reduction · integration · nextflow · nf-core · pipeline · quality-control · scverse
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- McQuaCnextflow · nf-core · pipeline · quality-control
The pipeline performs a comprehensive quality control of mass spectrometry-based proteomics experiments.
- scbeandimensionality-reduction · integration
Single-cell data analysis
- treevalnextflow · pipeline · quality-control
Pipelines for the production of Treeval data
- bactmapnextflow · nf-core · pipeline
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
- circdnanextflow · nf-core · pipeline
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
- circrnanextflow · nf-core · pipeline
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
- api.github.com/repos/nf-core/scdownstreamretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-05, 113 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/15.json→ .entries["scdownstream"]
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