scib-reproducibility
importedsoftware/scib-reproducibility
Additional code and analysis from the single-cell integration benchmarking project
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- dormant
- Maturity
- deployed
- Organization
- theislab
- Country
- unknown
- Repository
- github.com/theislab/scib-reproducibility
- Documentation
- unknown
- Tags
- benchmarking · integration · results · rna-seq · scrna-seq · single-cell · website
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- BgeeDB_Rrna-seq · scrna-seq · single-cell
Source code of the R packge BgeeDB to use data from the Bgee database
- BITFAMrna-seq · scrna-seq · single-cell
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021)…
- devCellPyrna-seq · scrna-seq · single-cell
devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
- Health-Privacy-Challengerna-seq · scrna-seq · single-cell
The starter kit for the CAMDA 2026 Health Privacy Challenge.
- PeakATailrna-seq · scrna-seq · single-cell
Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.
- phd-thesis-analysisrna-seq · scrna-seq · single-cell
Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data
- api.github.com/repos/theislab/scib-reproducibilityretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2022-12-19, 74 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
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/v1/entries/3.json→ .entries["scib-reproducibility"]
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