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scphylo-tools

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software/scphylo-tools

A python toolkit for single-cell tumor phylogenetic analysis

Machine-generated from the listed sources and not yet reviewed by a human.

scphylo-tools project image
GitHub preview card for faridrashidi/scphylo-tools. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
BSD-3-Clause(osi)
Status
active
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
scphylo-tools.readthedocs.io
Repository
github.com/faridrashidi/scphylo-tools
Documentation
unknown
Tags
algorithms · bioinformatics · cancer · computational-biology · evolution · genomics · phylogenetics · python · single-cel · single-cell · transcriptomics
Regulatory
unknown
similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • trisicellalgorithms · bioinformatics · cancer · evolution · genomics · phylogenetics · single-cell · transcriptomics

    Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data

  • BUSCO_phylogenomicsbioinformatics · evolution · genomics · phylogenetics

    BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins

  • ClipKITbioinformatics · evolution · genomics · phylogenetics

    a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

  • orthofisherbioinformatics · evolution · genomics · phylogenetics

    a broadly applicable tool for automated gene identification and retrieval

  • orthosnapbioinformatics · evolution · genomics · phylogenetics

    a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

  • PhyKITbioinformatics · evolution · genomics · phylogenetics

    a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies

sources
  1. api.github.com/repos/faridrashidi/scphylo-tools
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-08-22, 8 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/29.json→ .entries["scphylo-tools"]

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