skDER
importedsoftware/skder
skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- BSD-3-Clause(osi)
- Status
- active
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/raufs/skDER
- Documentation
- unknown
- Tags
- average-nucleotide-identity · genome-dereplication · genomics · representative-genome · strain-clustering
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- skaniaverage-nucleotide-identity
Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
- adamgenomics
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
- adaptgenomics
A package for designing activity-informed nucleic acid diagnostics for viruses.
- adVNTRgenomics
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
- aegeagenomics
Amazon Web Services Operator Interface
- agi-biogenomics
Genomic and Proteomic data exploration and pattern mining
- api.github.com/repos/raufs/skDERretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-08-24, 62 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/14.json→ .entries["skder"]
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