SoftCount
importedsoftware/softcount
Hybrid automated/manual colony counting for soft agar colony formation assays. Browser-based tool with live threshold tuning, manual annotation, and CSV export. Runs locally for data privacy.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/Nima-Sarfaraz/SoftCount
- Documentation
- unknown
- Tags
- automation · bioinformatics · cancer-research · cell-biology · colony · colony-counter · colony-formation-assay · fastapi · image-analysis · image-processing · microscopy · opencv · python · react · scientific-software · soft-agar-assay
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- OADautomation · image-analysis · image-processing · microscopy
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
- ptbp1-imagej-analysiscell-biology · microscopy · opencv
Automated ImageJ/Fiji and Python pipeline for quantifying PTBP1 and RRM2 domain subcellular localization from fluorescence microscopy images in heterokaryon assays.
- openoncologybioinformatics · cancer-research · fastapi
Open-source precision oncology platform that ranks FDA-approved and repurposing drug candidates from a patient's variant profile using OncoKB, AlphaMissense, OpenTargets and ChEMBL evidence. Blinded…
- u-integratebioinformatics · cell-biology · image-analysis
Pipeline for inference of Granger-causal relations in molecular systems to study actin regulation in lamellipodia
- cmeAnalysisbioinformatics · cell-biology · microscopy
clathrin-mediated endocytosis analysis
- u-registerbioinformatics · cell-biology · microscopy
Analyze local cell edge motions (e.g. protrusion and retraction) and to locally sample intracellular fluorescence signals in 2D fluorescence microscopy data.
- api.github.com/repos/Nima-Sarfaraz/SoftCountretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-02-05, 8 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/4.json→ .entries["softcount"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.