scrnaseq
importedprotocols/scrnaseq
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Protocols & Guidelines
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- nf-core
- Country
- unknown
- Homepage
- nf-co.re/scrnaseq
- Repository
- github.com/nf-core/scrnaseq
- Documentation
- unknown
- Tags
- 10x-genomics · 10xgenomics · alevin · bustools · cellranger · kallisto · nextflow · nf-core
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- spatialvi10x-genomics · 10xgenomics · nextflow · nf-core
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
- kallistobustoolsbustools · kallisto
kallisto | bustools workflow for pre-processing single-cell RNA-seq data
- scnanoseq10xgenomics · nextflow · nf-core
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
- EDSalevin
:bulb: :floppy_disk: :minidisc: A simple, intuitive and Efficient single cell binary Data Storage format
- scrnaseq_processing_seurat10xgenomics
A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package…
- bactmapnextflow · nf-core
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
- api.github.com/repos/nf-core/scrnaseqretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-08-05, 347 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/41.json→ .entries["scrnaseq"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.