scrnaseq_processing_seurat
importedsoftware/scrnaseq-processing-seurat
A Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package…
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- epigen
- Country
- unknown
- Documentation
- unknown
- Tags
- 10xgenomics · bioinformatics · biomedical-data-science · cite-seq · sccrispr-seq · scrna-seq · single-cell · snakemake
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- mixscape_seuratbioinformatics · biomedical-data-science · sccrispr-seq · scrna-seq · single-cell · snakemake
A Snakemake workflow and MrBiomics module for performing perturbation analyses of pooled (multimodal) CRISPR screens with sc/snRNA-seq read-out (scCRISPR-seq) powered by the R package Seurat's…
- dea_seuratbioinformatics · biomedical-data-science · scrna-seq · single-cell · snakemake
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
- scPerturbcite-seq · scrna-seq · single-cell
scPerturb: A resource and a python/R tool for single-cell perturbation data
- kanabioinformatics · cite-seq · single-cell
Single cell analysis in the browser
- oracle-scrna-seqbioinformatics · scrna-seq · single-cell · snakemake
Single-cell RNA-seq following scverse practices: QC, doublet detection, normalization, batch correction, clustering, marker genes, and cell-type annotation, with optional trajectory analysis.
- ADTnormcite-seq · single-cell
ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration.
- api.github.com/repos/epigen/scrnaseq_processing_seuratretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-01-29, 60 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
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