openmedical/registry
← registry

ALLCools

imported

software/allcools

Toolkit for single-cell DNA methylation analysis.

Machine-generated from the listed sources and not yet reviewed by a human.

ALLCools project image
GitHub preview card for lhqing/ALLCools. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
active
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
lhqing.github.io/ALLCools/intro.html
Repository
github.com/lhqing/ALLCools
Documentation
unknown
Tags
allc-format · bioinformatics · dna-methylation · epigenomics · genomics · single-cell
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • MetaInformAntbioinformatics · epigenomics · genomics · single-cell

    METAINFORMANT is a Python 3.11+ multi-omic bioinformatics toolkit spanning 28 modules and 650+ files for DNA, RNA-seq, protein, epigenome and single-cell analysis, GWAS with fine-mapping and eQTL,…

  • DMRichRbioinformatics · dna-methylation

    A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine…

  • bapepigenomics · genomics · single-cell

    Bead-based single-cell atac processing

  • ngs17epigenomics · genomics · single-cell

    Materials used during #NGSchool2017

  • sinceiepigenomics · genomics · single-cell

    A command-line and python toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data

  • chromoformerbioinformatics · epigenomics · genomics

    The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

sources
  1. api.github.com/repos/lhqing/ALLCools
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-05-25, 50 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/10.json→ .entries["allcools"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.