bambu-pipe
importedsoftware/bambu-pipe
Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- active
- Maturity
- deployed
- Organization
- GoekeLab
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/GoekeLab/bambu-pipe
- Documentation
- unknown
- Tags
- bambu · genomics · isoform-quantification · long-read-rna-seq · long-read-sequencing · nanopore · nextflow · pacbio · pipeline · rna-seq · single-cell · spatial-transcriptomics · transcript-discovery · transcript-quantification · transcriptomics
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- scnanoseqlong-read-sequencing · nanopore · nextflow · pipeline · rna-seq
Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
- SCALPELisoform-quantification · nextflow · single-cell · transcriptomics
Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.
- scasasingle-cell · transcript-quantification · transcriptomics
SCASA: Single cell transcript quantification tool
- nallolong-read-sequencing · nanopore · pacbio
An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
- brieisoform-quantification · rna-seq · single-cell
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
- Clair3-RNAlong-read-sequencing · nanopore · rna-seq
Clair3-RNA - a long-read small variant caller for RNA sequencing data
- api.github.com/repos/GoekeLab/bambu-piperetrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-08-25, 24 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/1.json→ .entries["bambu-pipe"]
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