cLoops

Category

Software & Systems

Subcategory

unknown

License

MIT(osi)

Status

dormant

Maturity

deployed

Organization

unknown

Country

unknown

Homepage

yaqiangcao.github.io/cLoops/

Repository

github.com/YaqiangCao/cLoops

Documentation

unknown

Tags

3d-genome · algorithm · bioinformatics · chia-pet · chromatin-interaction · chromatin-loops · chromatin-stripes · clustering · dbscan · example-data · hi-c · hichip · loops-calling · ngs · pipeline · python · sequencing · stripes · tool · trac-looping

Regulatory

unknown

• YaqiangCao
• nefclan
• actions-user

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• juicer3d-genome · bioinformatics · hi-c · ngs

  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

• pairtools3d-genome · bioinformatics · hi-c · ngs

  Extract 3D contacts (.pairs) from sequencing alignments

• pgltoolschia-pet · hi-c

  Paired Genomic Loci Tool Suite

• chromosightchromatin-loops · hi-c

  Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps

• mustachechromatin-loops · hi-c

  Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

• galaxybioinformatics · ngs · pipeline · sequencing

  Data intensive science for everyone.

1. api.github.com/repos/YaqiangCao/cLoops
   retrieved 2026-08-25 · via github-api

   Machine-imported from GitHub search. Last push 2022-05-19, 114 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

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/v1/entries/25.json→ .entries["cloops"]

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