pairtools

imported

software/pairtools

Extract 3D contacts (.pairs) from sequencing alignments

Machine-generated from the listed sources and not yet reviewed by a human.

pairtools project image — GitHub preview card for open2c/pairtools. Served by its origin, not stored here, and not covered by this registry’s licence.

record

Category: Software & Systems
Subcategory: unknown
License: MIT(osi)
Status: active
Maturity: deployed
Organization: open2c
Country: unknown
Homepage: unknown
Repository: github.com/open2c/pairtools
Documentation: unknown
Tags: 3d-genome · bioinformatics · file-formatter · hi-c · ngs · pairs-file · python
Regulatory: unknown

built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

cLoops3d-genome · bioinformatics · hi-c · ngs
Accurate and flexible loops calling tool for 3D genomic data.
juicer3d-genome · bioinformatics · hi-c · ngs
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
cooler3d-genome · bioinformatics
A cool place to store your Hi-C
coolpuppybioinformatics · hi-c
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
HiCPeaksbioinformatics · hi-c
A Python implementation for BH-FDR and HiCCUPS
hictkbioinformatics · hi-c
Blazing fast toolkit to work with .hic and .cool files

sources

api.github.com/repos/open2c/pairtools
retrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-07-29, 138 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/32.json→ .entries["pairtools"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.