GenomicsDB

imported

software/genomicsdb

High performance data storage for importing, querying and transforming variants.

Machine-generated from the listed sources and not yet reviewed by a human.

GenomicsDB project image — GitHub preview card for GenomicsDB/GenomicsDB. Served by its origin, not stored here, and not covered by this registry’s licence.

record

Category: Software & Systems
Subcategory: unknown
License: MIT(osi)
Status: maintained
Maturity: deployed
Organization: GenomicsDB
Country: unknown
Homepage: genomicsdb.readthedocs.io
Repository: github.com/GenomicsDB/GenomicsDB
Documentation: unknown
Tags: bioinformatics · cpp · gatk · genomics · genomicsdb · java · mpi · precision-medicine · scala · spark · variant · variant-calling
Regulatory: unknown

built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

dysgubioinformatics · genomics · variant · variant-calling
Toolkit for calling structural variants using short or long reads
gatkbioinformatics · gatk · genomics · spark
Official code repository for GATK versions 4 and up
gorbioinformatics · genomics · scala · spark
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel…
CalliNGS-NFbioinformatics · gatk · genomics · variant-calling
GATK RNA-Seq Variant Calling in Nextflow
GermlineEnrichmentbioinformatics · gatk · variant-calling
Variant calling pipeline for germline enrichment NGS data
MutScanbioinformatics · variant
Detect and visualize target mutations by scanning FastQ files directly

sources

api.github.com/repos/GenomicsDB/GenomicsDB
retrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2025-05-15, 99 stars, license reported as NOASSERTION. Category and schematic were assigned by keyword heuristics and are unreviewed. GitHub reported NOASSERTION; the licence was read from the LICENSE file as MIT, because GitHub's detector does not recognise open hardware licences.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/52.json→ .entries["genomicsdb"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.