get_phylomarkers
importedsoftware/get-phylomarkers
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- active
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/vinuesa/get_phylomarkers
- Documentation
- unknown
- Tags
- bash · clock-hypothesis · codon-alignment · core-genome · genomics · markers · maximum-likelihood · microbiology · orthologues · perl · phylogenetic-trees · phylogenetics · phylogenomics · phylogenomics-pipeline · pipeline · population-genetics · r · recombination · species-delimitation · species-trees
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- phylociraptorgenomics · maximum-likelihood · phylogenetics · phylogenomics · phylogenomics-pipeline · pipeline
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
- BUSCO_phylogenomicsgenomics · maximum-likelihood · phylogenetics · phylogenomics
BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins
- bac-genomics-scriptsgenomics · microbiology · perl
Collection of scripts for bacterial genomics
- forestergenomics · phylogenetic-trees · phylogenetics
forester is a collection of open-source libraries and tools for genomics and evolutionary biology research. It includes the tree viewer Archaeopteryx.
- orthologrcodon-alignment · genomics
Genome wide orthology inference and dNdS estimation
- ANIclustermapgenomics · phylogenetics · phylogenomics
A tool for drawing ANI clustermap between all-vs-all microbial genomes
- api.github.com/repos/vinuesa/get_phylomarkersretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-05-07, 60 stars, license reported as NOASSERTION. Category and schematic were assigned by keyword heuristics and are unreviewed. GitHub reported NOASSERTION; the licence was read from the LICENSE file as GPL-3.0, because GitHub's detector does not recognise open hardware licences.
Not yet verified by a human. Correct this record →
/v1/entries/39.json→ .entries["get-phylomarkers"]
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