metaGEM
importedsoftware/metagem
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Repository
- github.com/franciscozorrilla/metaGEM
- Documentation
- unknown
- Tags
- bioinformatics · computational-biology · flux-balance-analysis · genome-scale-metabolic-model · gut-microbiome · mags · metabolic-modeling · metabolic-models · metabolism · metagenome-assembled-genomes · metagenomics · microbial-ecology · microbiome · snakemake · systems-biology
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- scCellFiemetabolic-modeling · metabolism · systems-biology
scCellFie infers metabolic activities from single-cell and spatial transcriptomics and offers a variety of downstream analyses.
- MicrobeRXcomputational-biology · gut-microbiome · metabolic-models · microbiome
MicrobeRX
- DRAMbioinformatics · metagenome-assembled-genomes · metagenomics · microbiome
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
- DRAMbioinformatics · metagenome-assembled-genomes · metagenomics · microbiome
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
- mdmcleanerbioinformatics · mags · metagenomics
MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
- BASALTbioinformatics · computational-biology · metagenomics · microbiome
Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequencing data
- api.github.com/repos/franciscozorrilla/metaGEMretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-05-13, 273 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/47.json→ .entries["metagem"]
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