molkart

Category

Software & Systems

Subcategory

unknown

License

MIT(osi)

Status

active

Maturity

deployed

Organization

nf-core

Country

unknown

Homepage

nf-co.re/molkart

Repository

github.com/nf-core/molkart

Documentation

unknown

Tags

fish · image-processing · imaging · molecularcartography · nextflow · nf-core · pipeline · segmentation · single-cell · spatial · transcriptomics · workflow

Regulatory

unknown

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• hadgenextflow · nf-core · pipeline · single-cell · workflow

  Comprehensive pipeline for donor demultiplexing in single cell

• marsseqnextflow · nf-core · pipeline · single-cell · workflow

  MARS-seq v2 pre-processing pipeline with velocity

• pixelatornextflow · nf-core · pipeline · single-cell · workflow

  Pipeline to generate Proximity Network Assay data with Pixelator (Pixelgen Technologies AB)

• bactmapnextflow · nf-core · pipeline · workflow

  A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

• circdnanextflow · nf-core · pipeline · workflow

  Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

• circrnanextflow · nf-core · pipeline · workflow

  circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

1. api.github.com/repos/nf-core/molkart
   retrieved 2026-08-25 · via github-api

   Machine-imported from GitHub search. Last push 2026-08-12, 14 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

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