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NanoVarBench

imported

software/nanovarbench

Evaluating Nanopore-based bacterial variant calling

Machine-generated from the listed sources and not yet reviewed by a human.

NanoVarBench project image
GitHub preview card for mbhall88/NanoVarBench. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
maintained
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
doi.org/10.1101/2024.03.15.585313
Repository
github.com/mbhall88/NanoVarBench
Documentation
unknown
Tags
bacteria · benchmark · bioinformatics · illumina · microbial-genomics · nanopore · variant-calling
Regulatory
unknown
built by · 1

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • baktabacteria · bioinformatics · microbial-genomics

    Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  • PPanGGOLiNbacteria · bioinformatics · microbial-genomics

    Build a partitioned pangenome graph from microbial genomes

  • ClairS-TObioinformatics · illumina · nanopore

    ClairS-TO - a deep-learning method for tumor-only somatic variant calling

  • taxprofilerbioinformatics · illumina · nanopore

    Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

  • nf-ncov-vocbioinformatics · microbial-genomics · variant-calling

    A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can…

  • walkercreekbioinformatics · illumina · variant-calling

    A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.

sources
  1. api.github.com/repos/mbhall88/NanoVarBench
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2025-07-23, 23 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

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machine-readable

/v1/entries/58.json→ .entries["nanovarbench"]

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