oracle-scrna-seq
importedsoftware/oracle-scrna-seq
Single-cell RNA-seq following scverse practices: QC, doublet detection, normalization, batch correction, clustering, marker genes, and cell-type annotation, with optional trajectory analysis.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/challagandla/oracle-scrna-seq
- Documentation
- unknown
- Tags
- bioinformatics · computational-biology · differential-expression · genomics · scanpy · scrna-seq · single-cell · snakemake · transcriptomics
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- scLANEdifferential-expression · genomics · scrna-seq · single-cell · transcriptomics
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
- cirrocumulusbioinformatics · scanpy · scrna-seq · single-cell
Bring your single-cell data to life
- PeakATailbioinformatics · computational-biology · genomics · scrna-seq · single-cell
Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.
- MetaInformAntbioinformatics · computational-biology · genomics · single-cell · transcriptomics
METAINFORMANT is a Python 3.11+ multi-omic bioinformatics toolkit spanning 28 modules and 650+ files for DNA, RNA-seq, protein, epigenome and single-cell analysis, GWAS with fine-mapping and eQTL,…
- scphylo-toolsbioinformatics · computational-biology · genomics · single-cell · transcriptomics
A python toolkit for single-cell tumor phylogenetic analysis
- dea_seuratbioinformatics · scrna-seq · single-cell · snakemake
A Snakemake workflow and MrBiomics module for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
- api.github.com/repos/challagandla/oracle-scrna-seqretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-08-17, 9 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/5.json→ .entries["oracle-scrna-seq"]
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