pangene

Category

Software & Systems

Subcategory

unknown

License

MIT(osi)

Status

maintained

Maturity

deployed

Organization

unknown

Country

unknown

Homepage

unknown

Repository

github.com/lh3/pangene

Documentation

unknown

Tags

bioinformatics · pangenome

Regulatory

unknown

• lh3
• colindaven

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• bovine-graphsbioinformatics · pangenome

  Integrate multiple genome assemblies into a pangenome graph

• pangraphbioinformatics · pangenome

  A bioinformatic toolkit to align genome assemblies into pangenome graphs

• poodlebioinformatics · pangenome

  Nextflow pipeline that integrates reference-based SNP calling, recombination filtering, and pangenome analysis to detect genetically linked isolates, designed for bacterial genomic surveillance and…

• PPanGGOLiNbioinformatics · pangenome

  Build a partitioned pangenome graph from microbial genomes

• veritigbioinformatics · pangenome

  Sequence-level verification of structural variant assemblies against haplotype-resolved references

• adambioinformatics

  ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

1. api.github.com/repos/lh3/pangene
   retrieved 2026-08-25 · via github-api

   Machine-imported from GitHub search. Last push 2025-08-11, 212 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

/v1/entries/41.json→ .entries["pangene"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.