pygtftk
importedsoftware/pygtftk
A python package and a set of shell commands to handle GTF files
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/dputhier/pygtftk
- Documentation
- unknown
- Tags
- bed · bigwig · bioinformatics · cds · chip-seq · dna-sequences · exon · gene · genomic · genomics · gtf · intron · ngs · rna-seq · splicing · transcript · tss · tts
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- cljambed · bigwig · bioinformatics · genomics
A DNA Sequence Alignment/Map (SAM) library for Clojure
- deepToolsbioinformatics · chip-seq · genomics · ngs · rna-seq
Tools to process and analyze deep sequencing data.
- seq2sciencebioinformatics · chip-seq · ngs · rna-seq
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
- hgvsbioinformatics · genomics · transcript
Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).
- pybbibigwig · bioinformatics · genomics
Python bindings to UCSC BigWig and BigBed library
- helicalbioinformatics · dna-sequences · rna-seq
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
- api.github.com/repos/dputhier/pygtftkretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-01-20, 52 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/40.json→ .entries["pygtftk"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.