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pysam

imported

software/pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers…

Machine-generated from the listed sources and not yet reviewed by a human.

pysam project image
GitHub preview card for pysam-developers/pysam. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
active
Maturity
deployed
Organization
pysam-developers
Country
unknown
Homepage
pysam.readthedocs.io/en/latest/
Repository
github.com/pysam-developers/pysam
Documentation
unknown
Tags
bioinformatics · htslib · ngs · python
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • cyvcf2bioinformatics · htslib

    cython + htslib == fast VCF and BCF processing

  • hts-nimbioinformatics · htslib

    nim wrapper for htslib for parsing genomics data files

  • hts-pythonbioinformatics · htslib

    pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

  • AfterQCbioinformatics · ngs

    Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

  • bac-genomics-scriptsbioinformatics · ngs

    Collection of scripts for bacterial genomics

  • basevarbioinformatics · ngs

    This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data

sources
  1. api.github.com/repos/pysam-developers/pysam
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-07-19, 904 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/49.json→ .entries["pysam"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.