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scCATCH

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software/sccatch

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Machine-generated from the listed sources and not yet reviewed by a human.

scCATCH project image
GitHub preview card for ZJUFanLab/scCATCH. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
GPL-3.0(osi)
Status
dormant
Maturity
deployed
Organization
unknown
Country
unknown
Homepage
www.sciencedirect.com/science/article/pii/S2589004220300663
Repository
github.com/ZJUFanLab/scCATCH
Documentation
unknown
Tags
cell-markers · cluster-annotation · marker-genes · rna-seq · sequencing · seurat · single-cell · transcriptome
Regulatory
unknown
built by · 5

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • CyteTypemarker-genes · rna-seq · single-cell

    Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

  • LR-splitpiperna-seq · single-cell · transcriptome

    Demultiplexing and debarcoding tool designed for LR-Split-seq data.

  • TrendCatcherrna-seq · single-cell · transcriptome

    TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early…

  • pseudoBulkrna-seq · seurat · single-cell

    Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq pipeline.

  • RATTLErna-seq · transcriptome

    Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

  • COSGmarker-genes · single-cell

    Accurate and fast cell marker gene identification with COSG

sources
  1. api.github.com/repos/ZJUFanLab/scCATCH
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2023-05-08, 243 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/30.json→ .entries["sccatch"]

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