SCdeconR

Category

Software & Systems

Subcategory

unknown

License

GPL-3.0(osi)

Status

active

Maturity

deployed

Organization

unknown

Country

unknown

Homepage

liuy12.github.io/SCdeconR/

Repository

github.com/Liuy12/SCdeconR

Documentation

unknown

Tags

bulk-rna-seq-deconvolution · deconvolution · differential-expression · ffpe · geneset-enrichment-analysis · r · scdeconr · single-cell

Regulatory

unknown

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• ENIGMAbulk-rna-seq-deconvolution · deconvolution · single-cell

  A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)

• normalisrdifferential-expression · single-cell

  Causal inference, differential expression, and co-expression for scRNA-seq

• oracle-scrna-seqdifferential-expression · single-cell

  Single-cell RNA-seq following scverse practices: QC, doublet detection, normalization, batch correction, clustering, marker genes, and cell-type annotation, with optional trajectory analysis.

• scClustVizdifferential-expression · single-cell

  Explore and share your scRNAseq clustering results

• scLANEdifferential-expression · single-cell

  Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.

• SCPAdifferential-expression · single-cell

  R package for pathway analysis in scRNA-seq data

1. api.github.com/repos/Liuy12/SCdeconR
   retrieved 2026-08-25 · via github-api

   Machine-imported from GitHub search. Last push 2026-04-29, 10 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

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/v1/entries/18.json→ .entries["scdeconr"]

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