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snp-sites

imported

software/snp-sites

Finds SNP sites from a multi-FASTA alignment file

Machine-generated from the listed sources and not yet reviewed by a human.

snp-sites project image
GitHub preview card for sanger-pathogens/snp-sites. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
GPL-3.0(osi)
Status
dormant
Maturity
deployed
Organization
sanger-pathogens
Country
unknown
Documentation
unknown
Tags
bioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · research · sequencing
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

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  • gff3toemblbioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · sequencing

    Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI

  • ivabioinformatics · bioinformatics-pipeline · genomics · global-health · infectious-diseases · next-generation-sequencing · pathogen · sequencing

    de novo virus assembler of Illumina paired reads

sources
  1. api.github.com/repos/sanger-pathogens/snp-sites
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2020-12-16, 279 stars, license reported as NOASSERTION. Category and schematic were assigned by keyword heuristics and are unreviewed. GitHub reported NOASSERTION; the licence was read from the LICENSE file as GPL-3.0, because GitHub's detector does not recognise open hardware licences.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/33.json→ .entries["snp-sites"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.