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snputils

imported

software/snputils

Python toolkit for fast genotype I/O, ancestry analysis, population-genetics statistics, genotype QC, GWAS, and visualization

Machine-generated from the listed sources and not yet reviewed by a human.

snputils project image
GitHub preview card for AI-sandbox/snputils. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
BSD-3-Clause(osi)
Status
active
Maturity
deployed
Organization
AI-sandbox
Country
unknown
Homepage
snputils.org
Repository
github.com/AI-sandbox/snputils
Documentation
unknown
Tags
ancestry · bcf · bgen · bioinformatics · genetics · genomics · genotype-qc · gwas · pgen · plink · popgen · population-genetics · python · vcf
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • cljambcf · bioinformatics · genomics · vcf

    A DNA Sequence Alignment/Map (SAM) library for Clojure

  • gnomAD_DBbioinformatics · genetics · genomics · population-genetics · vcf

    Scalable SQLite database for fast querying of gnomAD variant annotations (allele frequency, depth, population metrics). Supports gnomAD v2-v4, WGS and WES.

  • gorbioinformatics · genetics · genomics · gwas · vcf

    GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel…

  • hailbioinformatics · genetics · genomics · gwas · vcf

    Cloud-native genomic dataframes and batch computing

  • PopGen.jlgenetics · genomics · popgen

    Population Genetics in Julia

  • peddyancestry · bioinformatics · genomics · vcf

    genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF

sources
  1. api.github.com/repos/AI-sandbox/snputils
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-08-13, 53 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/41.json→ .entries["snputils"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.