spots

Category

Software & Systems

Subcategory

unknown

License

GPL-3.0(osi)

Status

dormant

Maturity

deployed

Organization

unknown

Country

unknown

Homepage

stevexniu.github.io/spots/

Repository

github.com/stevexniu/spots

Documentation

unknown

Tags

rstats · single-cell · spatial-data-analysis · spatial-statistics · spatial-transcriptomics

Regulatory

unknown

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• LARISsingle-cell · spatial-data-analysis · spatial-transcriptomics

  LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics

• SpaTalksingle-cell · spatial-data-analysis · spatial-transcriptomics

  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

• MERINGUErstats · single-cell · spatial-transcriptomics

  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities

• BLESSspatial-statistics

  Code for simulation studies and UK Biobank application in paper 'Bayesian Lesion Estimation with a Structured Spike-and-Slab Prior'

• bambu-pipesingle-cell · spatial-transcriptomics

  Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

• COSGsingle-cell · spatial-transcriptomics

  Accurate and fast cell marker gene identification with COSG

1. api.github.com/repos/stevexniu/spots
   retrieved 2026-08-25 · via github-api

   Machine-imported from GitHub search. Last push 2022-07-30, 11 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

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/v1/entries/10.json→ .entries["spots"]

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