WGS-Analysis-VariantCalling
importedsoftware/wgs-analysis-variantcalling
Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- active
- Maturity
- deployed
- Organization
- AMRmicrobiology
- Country
- unknown
- Homepage
- unknown
- Documentation
- unknown
- Tags
- assembly · bacterial-genomes · illumina · variant-calling · variantcalling · wgs
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- snsillumina · wgs
Analysis pipelines for genomic sequencing data
- platonassembly · wgs
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
- viralreconassembly · illumina
Assembly and intrahost/low-frequency variant calling for viral samples
- SNPBacbacterial-genomes · variant-calling
SNP and variant calling pipeline for bacteria
- NanoVarBenchillumina · variant-calling
Evaluating Nanopore-based bacterial variant calling
- walkercreekillumina · variant-calling
A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.
- api.github.com/repos/AMRmicrobiology/WGS-Analysis-VariantCallingretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-03-06, 6 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/47.json→ .entries["wgs-analysis-variantcalling"]
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