Allmine

imported

software/allmine

AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :

Machine-generated from the listed sources and not yet reviewed by a human.

Allmine project image — GitHub preview card for tbersez/Allmine. Served by its origin, not stored here, and not covered by this registry’s licence.

record

Category: Software & Systems
Subcategory: unknown
License: MIT(osi)
Status: dormant
Maturity: deployed
Organization: unknown
Country: unknown
Homepage: www6.paca.inra.fr/gafl/
Repository: github.com/tbersez/Allmine
Documentation: unknown
Tags: allele-mining · bioinformatics-pipeline · genomics · ngs-pipeline · python · singularity · slurm · snakemake
Regulatory: unknown

built by · 2

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

snakemake-ont-bacterial-variantsbioinformatics-pipeline · singularity · snakemake
A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
smk-simple-slurmslurm · snakemake
A simple Snakemake profile for Slurm without --cluster-config
snipgeniegenomics · ngs-pipeline
command line and desktop tool for microbial variant calling
kGWASflowbioinformatics-pipeline · genomics · snakemake
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
bioinformatics-toolkitgenomics · slurm
Command-line tools for genomics and proteomics analysis
Wochenendegenomics · slurm
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

sources

api.github.com/repos/tbersez/Allmine
retrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2019-06-13, 4 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

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machine-readable

/v1/entries/39.json→ .entries["allmine"]

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