snakemake-ont-bacterial-variants
importedsoftware/snakemake-ont-bacterial-variants
A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- MPUSP
- Country
- unknown
- Homepage
- unknown
- Documentation
- unknown
- Tags
- bioinformatics-pipeline · conda · nanopore · singularity · snakemake · variant-calling · workflow
- Regulatory
- unknown
Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- kGWASflowbioinformatics-pipeline · conda · snakemake · workflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
- Allminebioinformatics-pipeline · singularity · snakemake
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
- snakemake-ms-proteomicsconda · snakemake · workflow
Pipeline for automatic processing and quality control of mass spectrometry data
- GEMSCANsnakemake · variant-calling · workflow
Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.
- V-pipebioinformatics-pipeline · conda
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
- taxprofilernanopore · workflow
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
- api.github.com/repos/MPUSP/snakemake-ont-bacterial-variantsretrieved 2026-08-05 · via github-api
Machine-imported from GitHub search. Last push 2026-03-24, 7 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/56.json→ .entries["snakemake-ont-bacterial-variants"]
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