cell-annotator
importedsoftware/cell-annotator
Automatically annotate cell types, consistently across samples.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- quadbio
- Country
- unknown
- Homepage
- cell-annotator.readthedocs.io
- Repository
- github.com/quadbio/cell-annotator
- Documentation
- unknown
- Tags
- annotation · genomics · llm · scrna-seq · single-cell
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- scDeepSortannotation · scrna-seq · single-cell
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
- scDeepSort_performance_comparisonannotation · scrna-seq · single-cell
The source code and results for different methods on annotating external testing datsets of human and mouse.
- cellmappergenomics · scrna-seq · single-cell
k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.
- oracle-scrna-seqgenomics · scrna-seq · single-cell
Single-cell RNA-seq following scverse practices: QC, doublet detection, normalization, batch correction, clustering, marker genes, and cell-type annotation, with optional trajectory analysis.
- PeakATailgenomics · scrna-seq · single-cell
Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.
- scLANEgenomics · scrna-seq · single-cell
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
- api.github.com/repos/quadbio/cell-annotatorretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-08-24, 27 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/20.json→ .entries["cell-annotator"]
Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.