cellmapper
importedsoftware/cellmapper
k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- MIT(osi)
- Status
- active
- Maturity
- deployed
- Organization
- quadbio
- Country
- unknown
- Homepage
- cellmapper.readthedocs.io
- Repository
- github.com/quadbio/cellmapper
- Documentation
- unknown
- Tags
- data-integration · genomics · k-nn · representation-learning · scrna-seq · single-cell · spatial-biology
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- cellhintdata-integration · scrna-seq · single-cell
A tool for semi-automatic cell type harmonization and integration
- spmindspatial-biology
[ICML 2026] Autonomous AI agent for end-to-end spatial proteomics analysis, with SP-Bench for agentic multiplexed-imaging workflows.
- scarchesdata-integration · scrna-seq
Reference mapping for single-cell genomics
- cell-annotatorgenomics · scrna-seq · single-cell
Automatically annotate cell types, consistently across samples.
- oracle-scrna-seqgenomics · scrna-seq · single-cell
Single-cell RNA-seq following scverse practices: QC, doublet detection, normalization, batch correction, clustering, marker genes, and cell-type annotation, with optional trajectory analysis.
- PeakATailgenomics · scrna-seq · single-cell
Single-cell APA peak calling and poly(A) tail analysis from scRNA-seq. Detects polyadenylation sites, quantifies 3'UTR length switching, and compares APA usage across cell clusters and samples.
- api.github.com/repos/quadbio/cellmapperretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2026-08-24, 16 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/32.json→ .entries["cellmapper"]
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