fastq_utils
importedsoftware/fastq-utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Machine-generated from the listed sources and not yet reviewed by a human.
- Category
- Software & Systems
- Subcategory
- unknown
- License
- GPL-3.0(osi)
- Status
- maintained
- Maturity
- deployed
- Organization
- unknown
- Country
- unknown
- Homepage
- unknown
- Repository
- github.com/nunofonseca/fastq_utils
- Documentation
- unknown
- Tags
- 10x · barcodes · dge · digital-gene-expression · drop-seq · fastq · fastq-files · fastq-filterpair · fastq-validation · high-throughput-sequencing · ngs · scrna-seq · sequencing · single-cell · umi · umi-count · validation
- Regulatory
- unknown
Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.
- zUMIsbarcodes · dge · fastq · single-cell
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
- fgumings · sequencing · umi
High-performance UMI tools for NGS data analysis
- cirrocumulus10x · scrna-seq · single-cell
Bring your single-cell data to life
- varsimhigh-throughput-sequencing · validation
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
- MutScanfastq · ngs · validation
Detect and visualize target mutations by scanning FastQ files directly
- scruffscrna-seq · single-cell · umi
Single Cell RNA-seq UMI Filtering Facilitator
- api.github.com/repos/nunofonseca/fastq_utilsretrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2025-06-18, 39 stars, license reported as GPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.
Not yet verified by a human. Correct this record →
/v1/entries/62.json→ .entries["fastq-utils"]
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