openmedical/registry
← registry

gatk-sv

imported

software/gatk-sv

A structural variation pipeline for short-read sequencing

Machine-generated from the listed sources and not yet reviewed by a human.

gatk-sv project image
GitHub preview card for broadinstitute/gatk-sv. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
BSD-3-Clause(osi)
Status
active
Maturity
deployed
Organization
broadinstitute
Country
unknown
Homepage
broadinstitute.github.io/gatk-sv/
Repository
github.com/broadinstitute/gatk-sv
Documentation
unknown
Tags
bioinformatics · genomics · structural-variants · structural-variation
Regulatory
unknown
built by · 6

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • OctopuSVgenomics · structural-variants · structural-variation

    Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.

  • MindTheGapbioinformatics · genomics · structural-variants

    MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

  • veritigbioinformatics · genomics · structural-variants

    Sequence-level verification of structural variant assemblies against haplotype-resolved references

  • adVNTRbioinformatics · genomics · structural-variation

    A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

  • dysgubioinformatics · genomics · structural-variation

    Toolkit for calling structural variants using short or long reads

  • kGWASflowbioinformatics · genomics · structural-variation

    kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

sources
  1. api.github.com/repos/broadinstitute/gatk-sv
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-08-05, 205 stars, license reported as BSD-3-Clause. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/38.json→ .entries["gatk-sv"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.