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OctopuSV

imported

software/octopusv

Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.

Machine-generated from the listed sources and not yet reviewed by a human.

OctopuSV project image
GitHub preview card for ylab-hi/OctopuSV. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
active
Maturity
deployed
Organization
ylab-hi
Country
unknown
Homepage
unknown
Repository
github.com/ylab-hi/OctopuSV
Documentation
unknown
Tags
bedpe · cancer-genomics · genomics · long-read-sequencing · somatic-variants · structural-variants · structural-variation · sv-calling · variant-calling · vcf
Regulatory
unknown
built by · 2

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • PopDelstructural-variation · sv-calling · variant-calling

    Population-wide Deletion Calling

  • veritiggenomics · long-read-sequencing · structural-variants · variant-calling

    Sequence-level verification of structural variant assemblies against haplotype-resolved references

  • gatk-svgenomics · structural-variants · structural-variation

    A structural variation pipeline for short-read sequencing

  • nRexsomatic-variants · structural-variation · variant-calling

    nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

  • octopusgenomics · somatic-variants · variant-calling

    Bayesian haplotype-based mutation calling

  • CANCER_VAR_CALLcancer-genomics · somatic-variants

    End-to-end somatic and germline variant calling pipeline using BWA, GATK HaplotypeCaller, VEP and ANNOVAR for tumor NGS analysis

sources
  1. api.github.com/repos/ylab-hi/OctopuSV
    retrieved 2026-08-25 · via github-api

    Machine-imported from GitHub search. Last push 2026-08-16, 47 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/40.json→ .entries["octopusv"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.