MindTheGap

imported

software/mindthegap

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

Machine-generated from the listed sources and not yet reviewed by a human.

MindTheGap project image — GitHub preview card for GATB/MindTheGap. Served by its origin, not stored here, and not covered by this registry’s licence.

record

Category: Software & Systems
Subcategory: unknown
License: AGPL-3.0(osi)
Status: dormant
Maturity: deployed
Organization: GATB
Country: unknown
Homepage: unknown
Repository: github.com/GATB/MindTheGap
Documentation: unknown
Tags: bioinformatics · debruijn-graph · gatb · genomics · structural-variants
Regulatory: unknown

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

gatk-svbioinformatics · genomics · structural-variants
A structural variation pipeline for short-read sequencing
veritigbioinformatics · genomics · structural-variants
Sequence-level verification of structural variant assemblies against haplotype-resolved references
OctopuSVgenomics · structural-variants
Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.
rarediseasestructural-variants
Call and score variants from WGS/WES of rare disease patients.
variantbenchmarkingstructural-variants
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
adambioinformatics · genomics
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

sources

api.github.com/repos/GATB/MindTheGap
retrieved 2026-08-25 · via github-api
Machine-imported from GitHub search. Last push 2022-04-20, 37 stars, license reported as AGPL-3.0. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/44.json→ .entries["mindthegap"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.