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GEMSCAN

imported

software/gemscan

Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.

Machine-generated from the listed sources and not yet reviewed by a human.

GEMSCAN project image
GitHub preview card for NCI-CGR/GEMSCAN. Served by its origin, not stored here, and not covered by this registry’s licence.
record
Category
Software & Systems
Subcategory
unknown
License
MIT(osi)
Status
active
Maturity
deployed
Organization
NCI-CGR
Country
unknown
Homepage
nci-cgr.github.io/GEMSCAN/
Repository
github.com/NCI-CGR/GEMSCAN
Documentation
unknown
Tags
deepvariant · gatk4-haplotypecaller · snakemake · strelka2 · variant-calling · workflow
Regulatory
unknown
built by · 4

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

similar by tags

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

  • snakemake-ont-bacterial-variantssnakemake · variant-calling · workflow

    A Snakemake workflow for the identification of variants in bacterial genomes using nanopore long-read sequencing.

  • variant-calling-at-scaledeepvariant · variant-calling

    Scalable and High Performance Variant Calling on Cluster Environments

  • kGWASflowsnakemake · workflow

    kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

  • mapachesnakemake · workflow

    mapping pipeline for ancient DNA

  • snakemake-ms-proteomicssnakemake · workflow

    Pipeline for automatic processing and quality control of mass spectrometry data

  • deepvariantdeepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

sources
  1. api.github.com/repos/NCI-CGR/GEMSCAN
    retrieved 2026-08-05 · via github-api

    Machine-imported from GitHub search. Last push 2026-06-22, 8 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

Not yet verified by a human. Correct this record →

machine-readable

/v1/entries/61.json→ .entries["gemscan"]

Entries are sharded 64 ways by a stable hash of the id, so a consumer can find any record without an index.