hifiasm

Category

Software & Systems

Subcategory

unknown

License

MIT(osi)

Status

active

Maturity

deployed

Organization

unknown

Country

unknown

Homepage

unknown

Repository

github.com/chhylp123/hifiasm

Documentation

unknown

Tags

bioinformatics · denovo-assembly · genomics · hifi-read · pacbio

Regulatory

unknown

• chhylp123
• lh3
• molecules

Top contributors by commit count, from the project’s public repository. Avatars are served by their origin, not stored here. To be removed from this list, open an issue.

Computed from shared tags, weighted so a rare tag counts for more than a common one. These are suggestions, not curated relationships.

• fermi-litebioinformatics · denovo-assembly · genomics

  Standalone C library for assembling Illumina short reads in small regions

• fermikitbioinformatics · denovo-assembly · genomics

  De novo assembly based variant calling pipeline for Illumina short reads

• miniasmbioinformatics · denovo-assembly · genomics

  Ultrafast de novo assembly for long noisy reads (though having no consensus step)

• haslrbioinformatics · genomics · pacbio

  A fast tool for hybrid genome assembly of long and short reads

• bambu-pipegenomics · pacbio

  Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu

• MGSEgenomics · pacbio

  Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

1. api.github.com/repos/chhylp123/hifiasm
   retrieved 2026-08-05 · via github-api

   Machine-imported from GitHub search. Last push 2026-05-31, 796 stars, license reported as MIT. Category and schematic were assigned by keyword heuristics and are unreviewed.

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